Table 1 PTM filtering tokens and information extraction assessment
PTM | Filtering | Generic corpus | Positive corpora | |||
|---|---|---|---|---|---|---|
token | # Filtered astracts | # Retrieved abstracts | Precision | # Abstracts | Recall | |
Acetylation | “acet” | 26,144 | 1,753 | 65% | 97 | 89% |
Amidation | “amid” | 21,861 | 1,515 | 73% | 61 | 95% |
Disulfide bond | “disulf” | 6,933 | 1,095 | 94% | 514 | 75% |
Glycosylation | “glyco” | 31,379 | 2,746 | 73% | 464 | 85% |
Methylation | “methyl” | 28,015 | 664 | 57% | 47 | 87% |
Phosphorylation | “phospho” | 61,144 | 16,129 | 71% | 906 | 93% |
Sulfation | “sulf” | 20,834 | 256 | 65% | 40 | 92% |