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Table 3 Comparison of two groups of TFs divided according to results onLASAGNA and ClustalW2

From: LASAGNA: A novel algorithm for transcription factor binding site alignment

Factor

Group 11mean

Group 22mean

p-value3

# TFBSs 4

25.07483

25.83333

0.1409

Mean of TFBS length

18.78626

17.56167

0.08451

SD of TFBS length 5

8.180204

6.921905

0.06295

  1. 1. LASAGNA performed better than ClustalW2 on TFs in thisgroup.
  2. 2. ClustalW2 performed better than or equal to LASAGNA on TFs inthis group.
  3. 3. Wilcoxon signed-rank test p-value.
  4. 4. Number of binding sites for each TF.
  5. 5. Standard deviation of binding site length for each TF.
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BMC Bioinformatics

ISSN: 1471-2105

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