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Table 5 Comparison of two groups of TFs divided according to results onLASAGNA and MEME

From: LASAGNA: A novel algorithm for transcription factor binding site alignment

Factor

Group 11mean

Group 22mean

p-value3

# TFBSs4

23.33333

30.85417

0.03196

Mean of TFBS length

18.33468

19.04125

0.3007

SD of TFBS length 5

7.95844

7.730625

0.1846

  1. 1. LASAGNA performed better than MEME on TFs in this group.
  2. 2. MEME performed better than or equal to LASAGNA on TFs in thisgroup.
  3. 3. Wilcoxon signed-rank test p-value.
  4. 4. Number of binding sites for each TF.
  5. 5. Standard deviation of binding site length for each TF.
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BMC Bioinformatics

ISSN: 1471-2105

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