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Table 2 Performance on I-TASSER decoys

From: An improved method to detect correct protein folds using partial clustering

Energy/Program

Method

Criterion-1 (%)

Criterion-2 (/40) ± Std Dev.

I-TASSER

Energy only

59.7

NA (baseline)

with HS-Forest

68.4

27.2 ± 1.9

GaFolder

Energy only

57.1

19

with HS-Forest

75.3

27.3 ± 1.8

Consensus

Energy only

67.4

22

with HS-Forest

72.1

26.5 ± 1.2

Durandal

72.0

25.7 ± 1.2

Calibur-lite

74.1

26.5 ± 0.5

SPICKER 2.0

72.6

25.0

  1. Criterion-1 measures the percentage of decoys that the top scoring decoy outperformed; Criterion-2 measures the frequency with which the top decoy selected by a given method has a lower Cα RMSD than the one selected based on energy alone. The values behind ± are the standard deviations among different runs.