Table 1 Number of reads and junctions detected
From: PASTA: splice junction identification from RNA-Sequencing data
Run | Â | Â | Number of reads | PASTA junctions | TopHat junctions | Ratio |
|---|---|---|---|---|---|---|
| Â | Â | Â | (millions) | Â | Â | Â |
1 | Control | Lane 1 | 19.2 | 165541 | 80211 | 2.064 |
| Â | Â | Lane 3 | 15.4 | 149797 | 72908 | 1.828 |
| Â | Â | Total | 34.6 | 195731 | 112581 | 1.739 |
| Â | Mutant | Lane 1 | 21.8 | 169493 | 72908 | 2.325 |
| Â | Â | Lane 2 | 17.9 | 157481 | 82036 | 1.920 |
| Â | Â | Lane 3 | 22.3 | 162408 | 81823 | 1.985 |
| Â | Â | Lane 4 | 39.2 | 202157 | 59014 | 3.426 |
| Â | Â | Total | 101.2 | 287568 | 152196 | 1.889 |
2 | Control | Lane 1 | 29.9 | 166050 | 140831 | 1.179 |
| Â | Â | Lane 2 | 8.74 | 141885 | 107399 | 1.321 |
| Â | Â | Lane 3 | 10.2 | 144879 | 110459 | 1.312 |
| Â | Â | Total | 48.84 | 210016 | 157949 | 1.330 |
| Â | Mutant | Lane 1 | 27.6 | 148238 | 113908 | 1.301 |
| Â | Â | Lane 2 | 10.6 | 160885 | 124606 | 1.291 |
| Â | Â | Lane 3 | 25.4 | 175240 | 133601 | 1.312 |
| Â | Â | Lane 4 | 25.6 | 177388 | 133539 | 1.328 |
| Â | Â | Total | 89.2 | 250991 | 167664 | 1.497 |