From: PASTA: splice junction identification from RNA-Sequencing data
Run | Group | Â | PASTA | TopHat | Common | Common /PASTA | Common /TopHat |
---|---|---|---|---|---|---|---|
1 | Control | Lane 1 | 36702 | 15094 | 3267 | 0.089 | 0.216 |
 |  | Lane 3 | 29331 | 14416 | 3098 | 0.106 | 0.215 |
 |  | Total | 55647 | 26433 | 5368 | 0.096 | 0.203 |
 | Mutant | Lane 1 | 40393 | 15293 | 2589 | 0.064 | 0.169 |
 |  | Lane 2 | 35243 | 14997 | 2990 | 0.085 | 0.199 |
 |  | Lane 3 | 38547 | 16255 | 3110 | 0.081 | 0.191 |
 |  | Lane 4 | 60059 | 17930 | 2234 | 0.037 | 0.125 |
 |  | Total | 124104 | 53439 | 7947 | 0.064 | 0.149 |
2 | Control | Lane 1 | 35150 | 25080 | 10251 | 0.292 | 0.409 |
 |  | Lane 2 | 22487 | 12716 | 4785 | 0.213 | 0.376 |
 |  | Lane 3 | 24928 | 13716 | 5190 | 0.208 | 0.378 |
 |  | Total | 63898 | 34702 | 15181 | 0.238 | 0.437 |
 | Mutant | Lane 1 | 25348 | 14531 | 5710 | 0.225 | 0.393 |
 |  | Lane 2 | 33030 | 18266 | 7254 | 0.220 | 0.397 |
 |  | Lane 3 | 42695 | 22349 | 9368 | 0.219 | 0.419 |
 |  | Lane 4 | 43338 | 22205 | 9290 | 0.214 | 0.418 |
 |  | Total | 94651 | 41487 | 19214 | 0.203 | 0.463 |