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Table 5 Average coverage (in reads/junction) and probability score of junctions in ENSEMBL known genes

From: PASTA: splice junction identification from RNA-Sequencing data

  

Known junctions

Unknown junctions

Run

Lane id

Junctions

Avg Cov

Avg score

Canonical fraction

Junctions

Avg Cov

Avg score

Canonical fraction

1

1

127707

13.393

0.818

0.922

216559

1.872

0.222

0.125

 

3

120058

11.559

0.817

0.933

178275

1.857

0.217

0.122

 

5

127561

14.353

0.822

0.923

266177

1.808

0.200

0.111

 

6

121484

12.362

0.799

0.924

252970

1.737

0.178

0.1

 

7

121641

14.724

0.799

0.921

260782

2.033

0.194

0.106

 

8

135760

18.913

0.814

0.900

374704

2.151

0.203

0.116

2

1

127102

22.007

0.896

0.933

240424

2.120

0.403

0.146

 

2

119385

9.819

0.903

0.961

113407

1.629

0.364

0.155

 

3

119715

10.806

0.904

0.960

137369

1.627

0.332

0.139

 

5

122562

11.343

0.907

0.960

126883

1.676

0.394

0.158

 

6

125888

14.778

0.909

0.955

183848

1.811

0.348

0.138

 

7

126222

19.085

0.904

0.946

252840

2.151

0.339

0.127

 

8

127674

19.007

0.895

0.932

259528

2.140

0.342

0.124

  1. Known Junctions indicates predicted junctions appearing in ENSEMBL known genes, and Unknown Junctions indicates predicted junctions not appearing in ENSEMBL known genes. Only junctions with a maximum coverage of 100 were considered.