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Figure 4 | BMC Bioinformatics

Figure 4

From: Effects of using coding potential, sequence conservation and mRNA structure conservation for predicting pyrrolysine containing genes

Figure 4

Predicted consensus structures for each of the known pyrrolysine incorporating clusters. The consensus sequences are using IUPAC Ambiguity Codes. The consensus structures are predicted through the WAR web service [22] and are based on a variety of methods for structure predictions and alignments integrated through the WAR web service ([23-36]). For each structure, the average pairwise identity, free energy, covariance, base pair probability and percentage canonical base pairs are reported. The consensus structures suggested are not necessarily the correct structures, but reasonable (usually conservative) approximations. The different methods integrated in WAR predict slightly different structures, but the similarities between these are reflected in the consensus structure. It is clear that there are several different structures, but also that mttB does not seem to have any significant structure.

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