From: A detailed error analysis of 13 kernel methods for protein-protein interaction extraction
AIMed | BioInfer | HPRD50 | IEPA | LLL | |||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Total | T | F | T, % | F, % | Total | T | F | T, % | F, % | Total | T | F | T, % | F, % | Total | T | F | T, % | F, % | Total | T | F | T, % | F, % | |
0 | 77 | 73 | 4 | 7.3% | 0.1% | 58 | 44 | 14 | 1.7% | 0.2% | 4 | 1 | 3 | 0.6% | 1.1% | 2 | 1 | 1 | 0.3% | 0.2% | 5 | 0 | 5 | 0.0% | 3.0% |
1 | 95 | 89 | 6 | 8.9% | 0.1% | 158 | 107 | 51 | 4.2% | 0.7% | 7 | 4 | 3 | 2.5% | 1.1% | 13 | 5 | 8 | 1.5% | 1.7% | 7 | 0 | 7 | 0.0% | 4.2% |
2 | 105 | 101 | 4 | 10.1% | 0.1% | 206 | 130 | 76 | 5.1% | 1.1% | 12 | 8 | 4 | 4.9% | 1.5% | 11 | 3 | 8 | 0.9% | 1.7% | 27 | 0 | 27 | 0.0% | 16.3% |
3 | 121 | 104 | 17 | 10.4% | 0.4% | 306 | 198 | 108 | 7.8% | 1.5% | 18 | 7 | 11 | 4.3% | 4.1% | 26 | 13 | 13 | 3.9% | 2.7% | 10 | 0 | 10 | 0.0% | 6.0% |
4 | 139 | 115 | 24 | 11.5% | 0.5% | 349 | 203 | 146 | 8.0% | 2.0% | 26 | 10 | 16 | 6.1% | 5.9% | 30 | 10 | 20 | 3.0% | 4.1% | 16 | 0 | 16 | 0.0% | 9.6% |
5 | 140 | 91 | 49 | 9.1% | 1.0% | 440 | 225 | 215 | 8.9% | 3.0% | 20 | 12 | 8 | 7.4% | 3.0% | 43 | 19 | 24 | 5.7% | 5.0% | 21 | 2 | 19 | 1.2% | 11.4% |
6 | 142 | 70 | 72 | 7.0% | 1.5% | 481 | 209 | 272 | 8.2% | 3.8% | 33 | 9 | 24 | 5.5% | 8.9% | 61 | 22 | 39 | 6.6% | 8.1% | 26 | 1 | 25 | 0.6% | 15.1% |
7 | 176 | 65 | 111 | 6.5% | 2.3% | 619 | 248 | 371 | 9.8% | 5.2% | 35 | 15 | 20 | 9.2% | 7.4% | 51 | 20 | 31 | 6.0% | 6.4% | 29 | 8 | 21 | 4.9% | 12.7% |
8 | 248 | 72 | 176 | 7.2% | 3.6% | 785 | 256 | 529 | 10.1% | 7.4% | 37 | 9 | 28 | 5.5% | 10.4% | 79 | 31 | 48 | 9.3% | 10.0% | 19 | 6 | 13 | 3.7% | 7.8% |
9 | 372 | 69 | 303 | 6.9% | 6.3% | 876 | 245 | 631 | 9.7% | 8.8% | 46 | 10 | 36 | 6.1% | 13.3% | 99 | 32 | 67 | 9.6% | 13.9% | 26 | 15 | 11 | 9.1% | 6.6% |
10 | 461 | 47 | 414 | 4.7% | 8.6% | 1067 | 204 | 863 | 8.1% | 12.1% | 61 | 33 | 28 | 20.2% | 10.4% | 101 | 38 | 63 | 11.3% | 13.1% | 31 | 19 | 12 | 11.6% | 7.2% |
11 | 619 | 29 | 590 | 2.9% | 12.2% | 1061 | 164 | 897 | 6.5% | 12.6% | 49 | 19 | 30 | 11.7% | 11.1% | 112 | 46 | 66 | 13.7% | 13.7% | 32 | 32 | 0 | 19.5% | 0.0% |
12 | 1002 | 43 | 959 | 4.3% | 19.8% | 1390 | 183 | 1207 | 7.2% | 16.9% | 57 | 13 | 44 | 8.0% | 16.3% | 106 | 47 | 59 | 14.0% | 12.2% | 45 | 45 | 0 | 27.4% | 0.0% |
13 | 2137 | 32 | 2105 | 3.2% | 43.5% | 1870 | 118 | 1752 | 4.7% | 24.6% | 28 | 13 | 15 | 8.0% | 5.6% | 83 | 48 | 35 | 14.3% | 7.3% | 36 | 36 | 0 | 22.0% | 0.0% |