Skip to main content

Table 11 Classification results on the 219 PE pairs with CL evaluation

From: A detailed error analysis of 13 kernel methods for protein-protein interaction extraction

Kernel

r

TP

FP

e

kBSPS

37.1

218

1

81

combined

26.8

217

2

59

shallow

28.6

205

14

63

SL

29.9

202

17

65

syntactic

26.9

202

17

59

lexical

24.5

196

23

54

APG

26.9

194

25

59

cosine

26.6

181

38

58

SpT

42.1

177

42

92

edit

22.5

154

65

49

ST

29.2

126

93

64

SST

26.9

123

96

59

  1. Classification results on the 219 PE pairs with CL evaluation (in decreasing order according to the successfully classified pairs). Ratio (r) refers to the distribution of positive classes predicted by the kernel measured across the 5 corpora; TP/FP is the number of correctly/incorrectly classified PE pairs; e is 219·r, the expected number of positive class prediction projected onto the 219 PE pairs.