Table 2 The distribution of pairs for each corpus according to classification success level using cross-learning setting
From: A detailed error analysis of 13 kernel methods for protein-protein interaction extraction
AIMed | BioInfer | HPRD50 | IEPA | LLL | |||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Total | T | F | T, % | F, % | Total | T | F | T, % | F, % | Total | T | F | T, % | F, % | Total | T | F | T, % | F, % | Total | T | F | T, % | F, % | |
0 | 41 | 0 | 41 | 0.0% | 0.8% | 319 | 319 | 0 | 12.6% | 0.0% | 1 | 0 | 1 | 0.0% | 0.4% | 9 | 9 | 0 | 2.7% | 0.0% | 3 | 3 | 0 | 1.8% | 0.0% |
1 | 73 | 6 | 67 | 0.6% | 1.4% | 362 | 362 | 0 | 14.3% | 0.0% | 4 | 2 | 2 | 1.2% | 0.7% | 19 | 17 | 2 | 5.1% | 0.4% | 5 | 4 | 1 | 2.4% | 0.6% |
2 | 199 | 26 | 173 | 2.6% | 3.6% | 322 | 312 | 10 | 12.3% | 0.1% | 7 | 3 | 4 | 1.8% | 1.5% | 33 | 32 | 1 | 9.6% | 0.2% | 10 | 9 | 1 | 5.5% | 0.6% |
3 | 315 | 39 | 276 | 3.9% | 5.7% | 303 | 280 | 23 | 11.0% | 0.3% | 23 | 10 | 13 | 6.1% | 4.8% | 38 | 36 | 2 | 10.7% | 0.4% | 19 | 19 | 0 | 11.6% | 0.0% |
4 | 489 | 71 | 418 | 7.1% | 8.6% | 321 | 260 | 61 | 10.3% | 0.9% | 27 | 15 | 12 | 9.2% | 4.4% | 48 | 45 | 3 | 13.4% | 0.6% | 25 | 25 | 0 | 15.2% | 0.0% |
5 | 606 | 84 | 522 | 8.4% | 10.8% | 355 | 239 | 116 | 9.4% | 1.6% | 27 | 15 | 12 | 9.2% | 4.4% | 44 | 32 | 12 | 9.6% | 2.5% | 25 | 20 | 5 | 12.2% | 3.0% |
6 | 547 | 94 | 453 | 9.4% | 9.4% | 400 | 208 | 192 | 8.2% | 2.7% | 41 | 22 | 19 | 13.5% | 7.0% | 51 | 34 | 17 | 10.1% | 3.5% | 26 | 18 | 8 | 11.0% | 4.8% |
7 | 725 | 136 | 589 | 13.6% | 12.2% | 432 | 190 | 242 | 7.5% | 3.4% | 43 | 18 | 25 | 11.0% | 9.3% | 63 | 32 | 31 | 9.6% | 6.4% | 20 | 7 | 13 | 4.3% | 7.8% |
8 | 721 | 132 | 589 | 13.2% | 12.2% | 586 | 146 | 440 | 5.8% | 6.2% | 52 | 17 | 35 | 10.4% | 13.0% | 69 | 35 | 34 | 10.4% | 7.1% | 34 | 18 | 16 | 11.0% | 9.6% |
9 | 767 | 110 | 657 | 11.0% | 13.6% | 737 | 95 | 642 | 3.7% | 9.0% | 61 | 18 | 43 | 11.0% | 15.9% | 107 | 36 | 71 | 10.7% | 14.7% | 34 | 19 | 15 | 11.6% | 9.0% |
10 | 574 | 118 | 456 | 11.8% | 9.4% | 1060 | 79 | 981 | 3.1% | 13.8% | 50 | 14 | 36 | 8.6% | 13.3% | 110 | 13 | 97 | 3.9% | 20.1% | 56 | 8 | 48 | 4.9% | 28.9% |
11 | 414 | 69 | 345 | 6.9% | 7.1% | 1906 | 29 | 1877 | 1.1% | 26.3% | 52 | 16 | 36 | 9.8% | 13.3% | 131 | 6 | 125 | 1.8% | 25.9% | 50 | 12 | 38 | 7.3% | 22.9% |
12 | 363 | 115 | 248 | 11.5% | 5.1% | 2563 | 15 | 2548 | 0.6% | 35.7% | 45 | 13 | 32 | 8.0% | 11.9% | 95 | 8 | 87 | 2.4% | 18.0% | 23 | 2 | 21 | 1.2% | 12.7% |