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Table 7 Classification results on the 190 PD pairs with CL evaluation

From: A detailed error analysis of 13 kernel methods for protein-protein interaction extraction

Kernel r TP e TP/e TP/#PD
SpT 42.1 53 80 0.66 0.28
SST 26.9 39 51 0.76 0.21
ST 29.2 28 55 0.51 0.15
SL 29.9 27 57 0.47 0.14
combined 26.8 16 51 0.31 0.08
shallow 28.6 14 54 0.26 0.07
kBSPS 37.1 14 70 0.20 0.07
APG 26.9 9 51 0.18 0.05
edit 22.5 7 43 0.16 0.04
cosine 26.6 4 51 0.08 0.02
syntactic 26.9 2 51 0.04 0.01
lexical 24.5 1 47 0.02 0.01
  1. Classification results on the 190 PD pairs with CL evaluation (in decreasing order according to the number of successfully classified pairs). Ratio (r) refers to the distribution of positive classes predicted by the kernel measured across the 5 corpora; TP is the number of correctly classified PD pairs; e is 190·r, the expected number of negative class predictions projected onto the 190 PD pairs.