Table 1 List of gene set libraries ranked by number of terms
From: Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool
Gene | Mean genes per | ||
|---|---|---|---|
Gene-set library | Terms | coverage | term |
Down-regulated CMAP | 6100 | 8695 | 100 |
Up-regulated CMAP | 6100 | 11251 | 100 |
HMDB Metabolites | 3906 | 3729 | 47.1495 |
GeneSigDB | 2139 | 23729 | 126.6947 |
Human CoR Complexome | 1796 | 10231 | 158.2778 |
CORUM | 1673 | 2741 | 4.6934 |
Cancer Cell Line Encyclopedia | 967 | 15797 | 176.2079 |
GO Biological Process | 941 | 7683 | 78.4676 |
MSigDB Computational | 858 | 10061 | 106.4207 |
Genome Browser PWMs | 615 | 13362 | 275.1447 |
MGI Mammalian Phenotype Top 4 | 476 | 10496 | 201.7101 |
Kinase Enrichment Analysis KEA | 474 | 4533 | 36.7089 |
ENCODE TF ChIP-seq | 434 | 19851 | 1064.055 |
GO Molecular Function | 402 | 8469 | 121.8284 |
Chromosome Location | 386 | 32740 | 84.8187 |
PPI Hub Proteins | 385 | 16487 | 247.2286 |
Histone Modifications ChIP-seq | 356 | 21921 | 1232.129 |
TRANSFAC/JASPAR PWMs | 335 | 42887 | 1249.63 |
Pfam InterPro Domains | 311 | 7588 | 35.3408 |
BioCarta Pathways | 249 | 1295 | 17.6506 |
ChIP Enrichment Analysis ChEA | 240 | 42574 | 1455.7 |
microRNA TargetScan | 222 | 7504 | 154.6036 |
GO Cellular Component | 205 | 7325 | 172.1268 |
KEGG Pathways | 200 | 4128 | 48.44 |
WikiPathways | 199 | 2854 | 38.8191 |
MSigDB Oncogenic Signatures | 189 | 11250 | 165.709 |
OMIM Expanded | 187 | 2178 | 88.9198 |
Mouse Gene Atlas | 96 | 20686 | 660.1354 |
NCI-60 Cancer Cell Lines | 93 | 12232 | 343.3333 |
OMIM Disease | 90 | 1759 | 25.0667 |
VirusMINT | 85 | 851 | 14.8824 |
Human Gene Atlas | 84 | 15381 | 449.7619 |
SILAC Phosphoproteomics | 84 | 7732 | 341.869 |
Reactome Pathways | 78 | 3185 | 72.5128 |
MGI Mammalian Phenotype Top 3 | 71 | 10406 | 717.4366 |