Figure 7
From: A flood-based information flow analysis and network minimization method for gene regulatory networks
Flood network minimization overview for the E. coli gene regulatory network in the “Stationary phase” scenario. (A) Sub-network “reachable” from the inputs, which contains all nodes directly or indirectly regulated by the input nodes; (B) and (C) reduced sub-networks of nodes with the flood above 0.25 and 0.65 thresholds, respectively. Nodes represent genes; dark blue nodes in the center are the regulator nodes; light blue nodes in the outer circles are the regulated nodes (regulated genes from the same transcription unit and identical regulation are grouped together); grey nodes are the genes which are not included into the sub-network.