Skip to main content

Table 2 Execution times of MBMDR-3.0.3

From: An efficient algorithm to perform multiple testing in epistasis screening

SNPs

MBMDR-3.0.3

MBMDR-3.0.3

MBMDR-3.0.3

MBMDR-3.0.3

 

sequential execution

sequential execution

parallel workflow

parallel workflow

 

Binary trait

Continuous trait

Binary trait

Continuous trait

100

45 sec

1 min 35 sec

<1sec

<1sec

1,000

1 hour 16 minutes

2 hours 39 minutes

38 sec

1 min 17 sec

10,000

5 days 13 hours

11 days 19 hours

1 hour 3 min

2 hours 14 min

100,000

≈ 1.5 year

≈ 3 years

4 days 9 hours

≈ 9 days

  1. The parallel workflow was tested on a cluster composed of 10 blades, containing each four Quad-Core AMD Opteron(tm) Processor 2352 2.1 GHz. The sequential executions were performed on a single core of this cluster. The results prefixed by the symbol “ ≈” are extrapolated.