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Figure 2 | BMC Bioinformatics

Figure 2

From: D-Light on promoters: a client-server system for the analysis and visualization of cis-regulatory elements

Figure 2

GC-content, TFBS frequencies at various p-value cutoffs and ENCODE Txn occurrences. Data are collected in bins of 50 bases from a non-redundant human promoter set consisting of approx. 23.000 ±10 kB sequences. Upper panel: For high cutoff values such as p = 10−2 (red line) the TFBS density (TFBSd) curve approximately mirrors the GC content (right axis). Lower p-value cutoffs result in curves with a sharp peak around the TSS. Lower panel: The distribution of ENCODE Txn peak centers. The left y-axes are scaled to one according to the maximum peak.

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