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Figure 2 | BMC Bioinformatics

Figure 2

From: Investigating the concordance of Gene Ontology terms reveals the intra- and inter-platform reproducibility of enrichment analysis

Figure 2

Intra-platform concordance of significant GO terms enriched by GSEA among three test sites of AFX. (a) AFX_1 versus AFX_2; (b) AFX_1 versus AFX_3; (c) AFX_2 versus AFX_3. The scatter plots showed the percentage of overlapping GO terms which were enriched by GSEA and derived from two test sites. Each color and each type of points represented the different gene lists that selected by different statistical methods and different cutoff. The x-axis represents the number of enriched GO terms selected as significance, and y-axis is the percentage (%) of GO terms common to the two AFX test sites enrichment results. The _1, _2 and _3 suffixes refer to test site locations.

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BMC Bioinformatics

ISSN: 1471-2105

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