From: A metadata-aware application for remote scoring and exchange of tissue microarray images
Cancergrid CDE name | API DES XML tag name | Comments |
---|---|---|
Donor Tissue Block Identifier | core_histo-repository_donor-block | |
Tissue Microarray Recipient Block Identifier | block_identifier | |
Tissue Microarray Recipient Block Core Diameter | block_core_size | |
Tissue Microarray Recipient Block Core Spacing | block_core_spacing | |
Tissue Microarray Recipient Block Core Position Used | Used to indicate a gap in the TMA Recipient Block where a core has not been inserted. | |
Tissue Microarray Recipient Block Slice Number | Useful for querying whether a core image is from a slice adjacent to another core image. | |
Tissue Microarray Recipient Block x coordinate | block_array-hash describes the x,y location for each core in the block array, associating an identifier with each core location. | |
Tissue Microarray Recipient Block y coordinate | ||
Tissue Microarray Slide Identifier | slide_identifier | |
Tissue Microarray Core Element Identifier | core_array_id serves the same function, to uniquely identify a core within a TMA Recipient Block | |
Allred Intensity Score | core_results_tissue-intensity is a more general numerical value to define the relative intensity of staining | |
Allred Proportion Score | Represents a specific staining system. | |
Allred Score for ER status | ||
Percentage tissue staining | core_results_percent-tissue-staining | |
HER2 status by immunohistochemistry | Represents a specific staining system. | |
Binary biomarker staining result | A simple scoring system with a binary value to indicate whether the tissue is positively or negatively stained for a particular marker. |