Datasets | apLCMS | xMSanalyzer-apLCMS | XCMS v1.20.1 |
---|---|---|---|
 | {default} | {3,0.3} υ {3,0.8} | {step = 0.001, snthresh = 3, max = 5, mzdiff = 0.1} |
Sample Set 1 (Column A) | 1454 | 2384 | 1027 |
 | MMCD: 314 (21.6%) | MMCD: 534 (22.3%) | MMCD: 222 (21.6%) |
 | Metlin: 292 (20.1%) | Metlin: 433 (18.1%) | Metlin: 230 (22.4%) |
Sample Set 1 (Column B) | 1238 | 2201 | 998 |
 | MMCD: 309 (25%) | MMCD: 557 (25.3%) | MMCD: 261 (26.1%) |
 | Metlin: 279 (22.5%) | Metlin: 468 (21.2%) | Metlin: 252 (25.2%) |
Sample Set 2 (Column A) | 1324 | 2677 | 1262 |
 | MMCD: 408 (30.8%) | MMCD: 732 (27.3%) | MMCD: 324 (25.7%) |
 | Metlin: 497 (37.5%) | Metlin: 705 (26.3%) | Metlin: 431 (34.2%) |
Sample Set 2 (Column B) | 1573 | 2969 | 1395 |
 | MMCD: 508 (32.3%) | MMCD: 794 (26.7%) | MMCD: 359 (25.7%) |
 | Metlin: 693 (44.1%) | Metlin: 848 (28.5%) | Metlin: 514 (36.8%) |
Average over all datasets | Total: 1397 | Total: 2558 | Total: 1171 |
 | Known metabolites: 413 (29.6%) | Known metabolites: 634 (24.8%) | Known metabolites: 324 (27.7%) |