Table 5 Average distribution (in percentage) of F -scores of detected CNVs in the real data processing
From: CNV-TV: A robust method to discover copy number variation from short sequencing reads
F-score | 0.0∼ 0.1 | 0.1∼ 0.2 | 0.2∼ 0.3 | 0.3∼ 0.4 | 0.4∼ 0.5 | 0.5∼ 0.6 | 0.6∼ 0.7 | 0.7∼ 0.8 | 0.8∼ 0.9 | 0.9∼ 1.0 |
|---|---|---|---|---|---|---|---|---|---|---|
CNV-seq | 86.27 | 2.88 | 2.15 | 1.62 | 1.79 | 0.95 | 1.85 | 1.79 | 0.71 | 0.00 |
FREEC | 85.25 | 4.28 | 2.43 | 1.79 | 1.51 | 1.19 | 1.48 | 0.90 | 1.17 | 0.00 |
readDepth | 94.47 | 0.91 | 0.53 | 0.99 | 0.65 | 0.42 | 0.45 | 1.18 | 0.38 | 0.00 |
CNVnator | 89.72 | 2.56 | 0.97 | 0.69 | 1.18 | 0.94 | 0.93 | 1.31 | 0.93 | 0.76 |
SegSeq | 89.59 | 3.19 | 2.10 | 1.03 | 1.60 | 1.03 | 0.45 | 0.20 | 0.35 | 0.41 |
EWT | 96.12 | 0.67 | 0.48 | 0.49 | 0.38 | 0.31 | 0.28 | 0.75 | 0.19 | 0.32 |
CNV-TV | 83.71 | 3.13 | 2.20 | 1.39 | 1.74 | 2.57 | 0.74 | 2.43 | 1.57 | 0.49 |