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Table 3 Prediction accuracy of CBF-PSSEs and PBF-PSSE for four datasets

From: Comparison study on statistical features of predicted secondary structures for protein structural class prediction: From content to position

Dataset

Type

Method

Prediction accuracy (%)

   

All-α

All-β

α/β

α+β

Overall

25PDB

CBF-PSSE

content SE

89.39

76.75

68.21

60.54

74.06

CMV

88.04

69.53

66.76

62.81

72.09

MaxSeg SE

83.30

68.62

58.67

56.24

67.18

NMaxSeg SE

79.68

70.65

70.81

70.98

73.16

AvgSeg SE

79.91

69.53

68.79

70.75

72.44

NAvgSeg SE

35.44

96.61

0

6.12

36.58

3PATTERN

76.75

66.37

71.68

57.14

67.78

APPA

64.56

62.08

55.49

57.37

60.13

TPM

83.52

73.14

72.54

56.01

71.25

PBF-PSSE

 

74.72

77.88

69.08

78.00

75.25

640

CBF-PSSE

content SE

89.86

77.27

81.36

64.33

77.66

CMV

84.78

76.62

88.14

57.89

76.56

MaxSeg SE

73.91

70.13

74.58

52.05

67.34

NMaxSeg SE

79.71

75.32

85.31

60.82

75.16

AvgSeg SE

79.71

66.88

88.70

60.23

73.91

NAvgSeg SE

8.70

0

100

0

29.53

3PATTERN

65.94

60.39

87.01

52.05

66.72

APPA

63.04

64.29

65.54

53.22

61.41

TPM

76.81

68.83

84.75

62.57

73.28

PBF-PSSE

C F (δ)

76.09

78.57

84.75

78.95

79.84

FC699

CBF-PSSE

content SE

84.62

91.45

93.9

34.15

86.01

CMV

82.31

90.33

94.16

21.95

84.27

MaxSeg SE

83.85

86.25

97.08

12.2

83.57

NMaxSeg SE

83.08

86.62

92.84

51.22

85.43

AvgSeg SE

86.15

85.87

94.16

46.34

85.78

NAvgSeg SE

3.85

0

99.73

0

44.41

3PATTERN

76.92

80.3

95.76

50

83.68

APPA

63.85

75.09

95.49

0

75.17

TPM

90

88.48

87

51.22

84.5

PBF-PSSE

C F (δ)

88.46

81.41

88.86

80.49

85.66

1189

CBF-PSSE

content SE

86.1

83.67

84.43

55.19

78.11

CMV

83.41

81.63

84.13

36.93

72.89

MaxSeg SE

82.96

80.95

72.75

41.49

70.15

NMaxSeg SE

79.82

80.61

81.74

53.94

74.91

AvgSeg SE

78.48

73.47

82.93

48.55

71.87

NAvgSeg SE

0

0

1

0

30.59

3PATTERN

65.92

70.07

83.53

44.81

67.77

APPA

61.88

68.37

76.95

31.54

61.54

TPM

85.2

78.23

76.05

56.02

74.08

PBF-PSSE

C F (δ)

81.61

82.31

79.94

68.46

78.39

  1. The accuracy of each class and overall accuracy obtained by CBF-PSSEs and PBF-PSSE for datasets 25PDB, 640, FC699 and 1189.