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Table 1 Locations of online resources, with hackathon team listed whereappropriate

From: Phylotastic! Making tree-of-life knowledge accessible, reusable and convenient

Team

Description of resource

URI

-

Forester Project: software libraries for evolutionarybiology and comparative genomics research

https://code.google.com/p/forester/

-

GNRD: Global Names Recognition and Discovery

http://gnrd.globalnames.org

-

ITIS: Integrated Taxonomic Information System

http://www.itis.gov

-

Mesquite: A Modular System for Evolutionary Analysis

http://www.mesquiteproject.org

-

MSW3: Mammal Species of the World

http://www.bucknell.edu/msw3/

-

NCBI Entrez Programming Utilities (E-Utilities)

http://www.ncbi.nlm.nih.gov/books/NBK25500/

-

Open Tree of Life project

http://opentreeoflife.org

-

UniProt Web services

http://www.uniprot.org/faq/28

All

Phylotastic Main Web Site

http://www.phylotastic.org

All

Phylotastic Server Image

http://nescent.org/download/phylotastic.ova

Arch

Phylotastic Galaxy Instance

http://galaxy.phylotastic.org

Arch

Using Phylotastic Tools Inside Galaxy (Screencast)

http://www.youtube.com/watch?v=kMME658xOu4

Arch

Phylotastic MapReduce-based Tree Pruner

http://phylotastic-wg.nescent.org/script/phylotastic.cgi

Arch

Phylomatic Version 3

http://phylodiversity.net/phylomatic/

Branch

DateLife: When Lineages Meet (Presentation)

http://www.youtube.com/watch?v=xWmLrbUWtyM

Branch

DateLife Project

http://www.datelife.org

Shiny

Mesquite-o-Tastic screencast

http://www.youtube.com/watch?v=fdMQOVdQ8eM

TNRS

API description for TNRS

http://www.evoio.org/wiki/Phylotastic/TNRS

TNRS

Phylotastic TNRS service

http://api.phylotastic.org/tnrs

TreeStore

Phylotastic Taxonomic Name Resolution Ontology

http://phylotastic.org/terms/tnrs.rdf

  1. In case of difficulty resolving a URI to the expected resource,contact the authors or consult the online version of this table(http://www.phylotastic.org/docs/pub1table1.html).