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Table 2 Comparison of Reactome biological pathways

From: MIMO: an efficient tool for molecular interaction maps overlap

Query

MIMO

 

SAGA

 

Hits

Score

 

Hits

Score

R11045

R152

0.2667

 

N/A

-

R11193

R22258

0.2246

 

R13433

293

R1698

R22258,R11193

0.1439

 

R13433

454

R12508

R22258

0.1208

 

N/A

-

R22172

R152

0.1203

 

N/A

-

R11044

R14797,R11061

0.1200

 

N/A

-

R21303

R6900

0.0952

 

N/A

-

R21257

R14797

0.0863

 

N/A

-

R6185

R71

0.0800

 

R71,R1788

667

R12034

R11045,R6844,R21303,R111057

0.0667

 

N/A

-

R111183

R71,R13685,R13433,R13

0.0571

 

N/A

-

R111155

R11061

0.0376

 

N/A

-

R216

R22258

0.0261

 

N/A

-

R578

R634,R498,R16888,R111040

0.0210

 

N/A

-

R6167

R15518

0.0187

 

N/A

-

R75925

N/A

-

 

N/A

-

R27161

N/A

-

 

N/A

-

R24941

N/A

-

 

N/A

-

R12529

N/A

-

 

N/A

-

R12472

N/A

-

 

N/A

-

  1. Inference test. MIMO’s score (between 0 and 1) has been defined in Step (iv) of MIMO procedure. SAGA’s score (integer ≥0) denotes the level of dissimilarity between two maps: the lower the score, the higher the similarity (N/A means no hit found).
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BMC Bioinformatics

ISSN: 1471-2105

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