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Table 2 Performance comparison of PEWCC, CMC, ClusterONE, MCL, CFinder, and MCODE, with A c c ( K , P ) ≥ 0 . 5

From: Protein complex detection using interaction reliability assessment and weighted clustering coefficient

  Cmplx-D1 Cmplx-D2
Method Matched Cmplx Prec Rec F1 Matched Cmplx Prec Rec F1
PEWCC 58 0.435 0.469 0.451 61 0.468 0.910 0.618
CMC 56 0.297 0.346 0.320 57 0.385 0.889 0.537
ClusterONE 52 0.204 0.387 0.267 48 0.231 0.872 0.365
MCL 51 0.353 0.315 0.333 52 0.448 0.825 0.581
MCODE 39 0.330 0.241 0.279 34 0.386 0.540 0.450
CFilter 46 0.379 0.284 0.325 43 0.463 0.683 0.552