BMC Bioinformatics

Table 2 Performance comparison of PEWCC, CMC, ClusterONE, MCL, CFinder, and MCODE, with A c c ( K , P ) ≥ 0 . 5

From: Protein complex detection using interaction reliability assessment and weighted clustering coefficient

	Cmplx-D1				Cmplx-D2
Method	Matched Cmplx	Prec	Rec	F1	Matched Cmplx	Prec	Rec	F1
PEWCC	58	0.435	0.469	0.451	61	0.468	0.910	0.618
CMC	56	0.297	0.346	0.320	57	0.385	0.889	0.537
ClusterONE	52	0.204	0.387	0.267	48	0.231	0.872	0.365
MCL	51	0.353	0.315	0.333	52	0.448	0.825	0.581
MCODE	39	0.330	0.241	0.279	34	0.386	0.540	0.450
CFilter	46	0.379	0.284	0.325	43	0.463	0.683	0.552

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ISSN: 1471-2105

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