Protein complex detection using interaction reliability assessment and weighted clustering coefficient

BMC Bioinformatics

Table 3 The performance of CMC and ClusterONE with and without filtering method such as AdjstCD and PE measures with A c c ( K , P ) ≥ 0 . 5

Method	Clusters predicted	Matched Cmplx	Perc. of successful Cmplx	Rec	Prec	PPV	F1
CMC	133	45	28	0.217	0.263	0.172	0.238
ClusterONE	498	77	47.5	0.372	0.118	0.301	0.180
AdjstCD+CMC	127	75	46.3	0.362	0.455	0.277	0.404
AdjstCD+ClusterONE	139	78	48.2	0.377	0.393	0.294	0.385
PE+CMC	112	77	47.5	0.372	0.446	0.313	0.406
PE+ClusterONE	110	81	50	0.391	0.464	0.318	0.424
PE+WCC	128	89	54.9	0.435	0.469	0.262	0.451

ISSN: 1471-2105