Protein complex detection using interaction reliability assessment and weighted clustering coefficient

BMC Bioinformatics

Table 4 Compare PE-WCC to ClusterONE, RNSC, RRW, CMC, MCL and MCODE, where A c c ( K , P ) ≥ 0 . 25

Method	Clusters predicted	Matched Cmplx	Perc. of successful Cmplx	Sn	PPV	Acc	MMR
PEWCC	468	122	60.1	0.551	0.430	0.491	0.348
ClusterONE	473	88	43.3	0.454	0.427	0.440	0.195
RNSC	209	79	38.9	0.399	0.441	0.419	0.192
RRW	253	75	36.9	0.276	0.429	0.344	0.178
CMC	73	53	26.1	0.323	0.404	0.487	0.176
MCL	338	37	18.2	0.346	0.350	0.348	0.083
MCODE	85	21	10.3	0.285	0.284	0.285	0.048

ISSN: 1471-2105