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Table 1 Number of significant genes for the ApoAI knockout experiment

From: Separate-channel analysis of two-channel microarrays: recovering inter-spot information

FDR Log-ratio Separate channel
0.01 8 8
0.05 8 8
0.10 8 15
0.25 9 53
  1. The second and third columns show the number of genes declared differently expressed at various FDR levels by the log-ratio and separate channel analyses respectively. FDRs were estimated using the qvalue package. The separate channel analysis detects more significant genes.