Skip to main content

Table 1 Performance comparison among FusionQ, deFuse and TopHat-Fusion based on simulated data sets

From: FusionQ: a novel approach for gene fusion detection and quantification from paired-end RNA-Seq

Method

Total fusion No.

True fusion No.

Specificity

Sensitivity

Time/h

FusionQ

63

40

63.5%

80%

4.5

deFuse

62

37

60%

74%

3.4

TopHat-Fusion

32

26

81%

52%

0.67

  1. Specificity: Number of true fusions detected divided by number of all detect fusions.
  2. Sensitivity: Number of true fusions detected divided by total number of true fusions (50).