From: FusionQ: a novel approach for gene fusion detection and quantification from paired-end RNA-Seq
Cancer type | Sample names | Fragment lengths | Read length | Read numbers before QC | Read numbers after QC |
---|---|---|---|---|---|
Breast cancer | BT474 | 100, 200 | 50 | 21,423,697 | 9,416,283 |
SKBR3 | 100, 200 | 50 | 18,140,246 | 7,190,185 | |
KPL4 | 100 | 50 | 6,796,443 | 2,616,395 | |
MCF7 | 100 | 50 | 8,409,785 | 4,223,773 | |
Normal tissue | Normal | 100 | 50 | 4,564,298 | 2,701,076 |