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Table 2 Paired-end RNA-Seq data in the test dataset

From: FusionQ: a novel approach for gene fusion detection and quantification from paired-end RNA-Seq

Cancer type

Sample names

Fragment lengths

Read length

Read numbers before QC

Read numbers after QC

Breast cancer

BT474

100, 200

50

21,423,697

9,416,283

 

SKBR3

100, 200

50

18,140,246

7,190,185

 

KPL4

100

50

6,796,443

2,616,395

 

MCF7

100

50

8,409,785

4,223,773

Normal tissue

Normal

100

50

4,564,298

2,701,076