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Table 3 Summary of the detected fusions by the three tools

From: FusionQ: a novel approach for gene fusion detection and quantification from paired-end RNA-Seq

 

FusionQ

deFuse

TopHat-Fusion

Total number of fusions

298

1932

111

No. of detected fusions that are reported/ No. of documented fusions

81%(22/27)

74%(20/27)

59%(16/27)

  1. Comparison of the fusion number by FusionQ, deFuse, and TopHat-Fusion. Empty cells denote a failure of the tool to report a particular fusion.