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Table 7 The 10 top-ranked informative genes found by the three sparse logistic regression methods from the Leukaemia dataset

From: Sparse logistic regression with a L1/2 penalty for gene selection in cancer classification

Rank Gene description
  L1/2 LEN L1
1 CST3 cystatin C * CFD complement factor D (adipsin) * CST3 cystatin C *
2 MPO myeloperoxidase * CST3 cystatin C * CFD complement factor D (adipsin) *
3 IL8 interleukin 8 MPO myeloperoxidase * MPO myeloperoxidase *
4 GYPB glycophorin B (MNS blood group) DNTT deoxynucleotidyltransferase, terminal * IL8 interleukin 8 *
5 IGL immunoglobulin lambda locus TCL1A T-cell leukemia/lymphoma 1A * DNTT deoxynucleotidyltransferase, terminal *
6 DNTT deoxynucleotidyltransferase, terminal IGL immunoglobulin lambda locus * TCL1A T-cell leukemia/lymphoma 1A *
7 LOC100437488 interleukin-8-like IL8 interleukin 8 * IGL immunoglobulin lambda locus
8 LTB lymphotoxin beta (TNF superfamily, member 3) ZYX zyxin * LTB lymphotoxin beta (TNF superfamily, member 3)
9 TCRB T cell receptor beta cluster LTB lymphotoxin beta (TNF superfamily, member 3) * CD79A CD79a molecule, immunoglobulin-associated alpha
10 S100A9 S100 calcium binding protein A9 CD79A CD79a molecule, immunoglobulin-associated alpha HBB hemoglobin, beta
  1. The genes with star(*) are the most frequently selected genes to construct the classifiers according to the last column of Table 6, and the common genes obtained by L1/2 , LEN , L1 classifiers are emphasized with bold.