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Table 8 The 10 top-ranked informative genes found by the three sparse logistic regression methods from the Prostate dataset

From: Sparse logistic regression with a L1/2 penalty for gene selection in cancer classification

Rank Gene description
  L1/2 LEN L1
1 SLC43A3 solute carrier family 43, member 3 * AMOTL2 angiomotin like 2 * USP4 ubiquitin specific peptidase 4 (proto-oncogene) *
2 CD22 CD22 molecule * USP4 ubiquitin specific peptidase 4 (proto-oncogene) * CD22 CD22 molecule *
3 KHDRBS1 KH domain containing, RNA binding, signal transduction associated 1 * EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2 * EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2 *
4 ZNF787 zinc finger protein 787 * PRAF2 PRA1 domain family, member 2 * Gene symbol:AA683055, probe set: 34711_at *
5 GMPR guanosine monophosphate reductase * CACYBP calcyclin binding protein * AMOTL2 angiomotin like 2 *
6 AMOTL2 angiomotin like 2 Gene symbol:AA683055, probe set: 34711_at * VSNL1 visinin-like 1 *
7 EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2 VSNL1 visinin-like 1 * FLNC filamin C, gamma *
8 USP2 ubiquitin specific peptidase 2 SLC43A3 solute carrier family 43, member 3 * PRAF2 PRA1 domain family, member 2 *
9 USP4 ubiquitin specific peptidase 4 (proto-oncogene) CD22 CD22 molecule * CACYBP calcyclin binding protein *
10 ACTN4 actinin, alpha 4 TMCO1 transmembrane and coiled-coil domains 1 * SLC43A3 solute carrier family 43, member 3 *
  1. The genes with star(*) are the most frequently selected genes to construct the classifiers according to the last column of Table 6, and the common genes obtained by L1/2 , LEN , L1 classifiers are emphasized with bold.