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Table 3 Characteristics of the six new conformational classes found by clustering

From: Automatic workflow for the classification of local DNA conformations

Class ID

Description

N

δ

ϵ

ζ

α+ 1

β+ 1

γ+ 1

δ+ 1

χ

χ+ 1

35

BI-to-A, β+1 in g+, α+1/γ+1 crank (high t/t), anti/low anti

14

136

199

288

253

73

168

87

264

187

97

BII-DNA, α+1/γ+1 crank(t/g+), anti/low anti

13

142

294

110

149

198

55

151

260

185

113

BI-DNA, ϵ/ζ in t/g+, α+1/γ+1 crank (g+/t), anti/syn

13

143

206

61

82

204

192

146

242

68

114

BI-DNA, α+1/γ+1 crank (g-/g-), high β+1, anti/syn

18

141

201

282

307

258

304

151

236

65

115

BI DNA, high ϵ, anti/low anti

22

140

275

280

300

189

61

148

265

208

117

BI-DNA, β+1 in g+, α+1/γ+1 crank (high t/t), anti/low anti

19

139

196

286

249

73

172

145

263

211

  1. “Class ID” is a symbolic label of the class. “Description” is a short annotation of the class. “N” is the number of suites (dinucleotides) with the given class membership. Values of torsions represent the arithmetic means for the individual classes. Torsions are defined in Figure 2.