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Table 2 Results of re-analyses of 124 gene sets in Type II Diabetes data

From: Gene set analysis using variance component tests

 

Indpt

Unstr

F-2

F-adpt

CpSym

GSEA

Permutation

Indpt

5

1

2

2

5

1

Unstr

 

9

5

7

1

0

F-2

  

13

9

2

1

F-adpt

   

15

2

1

CpSym

    

9

1

GSEA

     

4

Scaled χ 2 approximation

Indpt

8

1

2

2

7

2

Unstr

 

10

5

8

1

0

F-2

  

14

8

2

1

F-adpt

   

14

2

1

CpSym

    

7

1

GSEA

     

4

  1. Each cell indicates the over-lapping number of differentially expressed gene sets at the nominal p-value=0.05 level using TEGS with different working covariance and GSEA shown in the corresponding column and row.
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BMC Bioinformatics

ISSN: 1471-2105

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