From: Linear combination test for gene set analysis of a continuous phenotype
Gene set | Size | LCT | LCT2 | SAMGS | Global |
---|---|---|---|---|---|
NADLER_OBESITY_UP | 46 | 0 | 0.004 | 0.108 | 0.098 |
HSA04920_ADIPOCYTOKINE_SIGNALING_PATHWAY | 68 | 0.003 | 0.003 | 0.042 | 0.032 |
HSA04140_REGULATION_OF_AUTOPHAGY | 26 | 0.004 | 0.007 | 0.003 | 0.002 |
HIF1_TARGETS | 32 | 0.006 | 0.025 | 0.027 | 0.03 |
DORSEY_DOXYCYCLINE_UP | 29 | 0.011 | 0.063 | 0.174 | 0.174 |
SHIPP_DLBCL_CURED_UP | 28 | 0.013 | 0.003 | 0.01 | 0.02 |
JNK_UP | 24 | 0.015 | 0.026 | 0.083 | 0.074 |
PROSTAGLANDIN_SYNTHESIS_REGULATION | 28 | 0.016 | 0.04 | 0.165 | 0.155 |
CARDIACEGFPATHWAY | 16 | 0.019 | 0.018 | 0.02 | 0.01 |
CITED1_KO_HET_UP | 23 | 0.022 | 0.023 | 0.036 | 0.031 |
XU_CBP_DN | 32 | 0.022 | 0.027 | 0.06 | 0.064 |
CHREBPPATHWAY | 16 | 0.027 | 0.029 | 0.029 | 0.023 |
OXSTRESS_BREASTCA_UP | 24 | 0.027 | 0.046 | 0.044 | 0.047 |
AGUIRRE_PANCREAS_CHR17 | 61 | 0.029 | 0.034 | 0.082 | 0.06 |
ST_GAQ_PATHWAY | 27 | 0.031 | 0.047 | 0.109 | 0.083 |
HSA04340_HEDGEHOG_SIGNALING_PATHWAY | 46 | 0.032 | 0.038 | 0.036 | 0.036 |
NFATPATHWAY | 47 | 0.034 | 0.041 | 0.065 | 0.053 |
HYPOXIA_REVIEW | 75 | 0.035 | 0.055 | 0.098 | 0.095 |
HSA04614_RENIN_ANGIOTENSIN_SYSTEM | 16 | 0.04 | 0.108 | 0.087 | 0.076 |
CPR_NULL_LIVER_DN | 16 | 0.041 | 0.047 | 0.038 | 0.036 |
HSA00380_TRYPTOPHAN_METABOLISM | 49 | 0.043 | 0.055 | 0.11 | 0.1 |
HSA04630_JAK_STAT_SIGNALING_PATHWAY | 135 | 0.045 | 0.065 | 0.173 | 0.167 |
DIAB_NEPH_UP | 58 | 0.046 | 0.051 | 0.196 | 0.194 |
TRYPTOPHAN_METABOLISM | 57 | 0.049 | 0.064 | 0.089 | 0.09 |
INSULIN_SIGNALING | 93 | 0.049 | 0.068 | 0.187 | 0.18 |
PASSERINI_GROWTH | 32 | 0.049 | 0.12 | 0.31 | 0.319 |
TNFA_NFKB_DEP_UP | 18 | 0.05 | 0.07 | 0.152 | 0.169 |
FRUCTOSE_AND_MANNOSE_METABOLISM | 24 | 0.055 | 0.02 | 0.039 | 0.041 |
ANDROGEN_AND_ESTROGEN_METABOLISM | 21 | 0.058 | 0.028 | 0.046 | 0.042 |
POMEROY_DESMOPLASIC_VS_CLASSIC_MD_DN | 38 | 0.091 | 0.048 | 0.13 | 0.116 |
TCA | 15 | 0.101 | 0.058 | 0.042 | 0.037 |
HSA03050_PROTEASOME | 21 | 0.103 | 0.113 | 0.051 | 0.048 |
PROTEASOME_DEGRADATION | 27 | 0.122 | 0.082 | 0.028 | 0.029 |