Figure 4

Visualization of the Allen Developing Mouse Brain Atlas data for age E11.5 after projecting to 2-D space using t-SNE (left column) and PCA (right column) at multiple levels of the ontology. The three rows correspond to Levels 1, 3, and 5. Each point corresponds to a brain voxel, which is displayed using the structure abbreviation and color of its Reference Atlas annotation. The structure abbreviations can be seen by zooming into each figure, and the structure name can be found in Figure 3.