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Table 1 Comparison of ID mapping resources

From: A decision theory paradigm for evaluating identifier mapping and filtering methods using data integration

ID pair group

nPairs

Pr(+)

Pr(−)

Utrue

Lfalse

EU mean

EU total

EnVision

887

0.431

0.569

0.862

0.569

0.293

260

NetAffx

1147

0.380

0.620

0.761

0.620

0.141

162

DAVID

1401

0.335

0.665

0.671

0.665

0.006

8

Use All

1522

0.323

0.677

0.647

0.677

−0.030

−45

  1. Use All=the union. Columns : nPairs=the number of UniProt-ProbeSet pairs reported by the indicated service; Utrue=the average utility from “+” and “0” pairs; Lfalse=the average loss from “−” pairs; EU mean is the average net utility per pair; EU total=nPairs?×?EU mean.
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BMC Bioinformatics

ISSN: 1471-2105

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