From: Fast online and index-based algorithms for approximate search of RNA sequence-structure patterns
RaligNAtor | RaligNAtor (sequence only) | blastn | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Family Acc. | Size | Seq. ident. |
| #TP | #FP | AUC | (pAUC) |
| #TP | #FP | AUC | (pAUC) | #TP | #FP | AUC | (pAUC) |
RF00032 | 9,900 | 48% | 3 | 9,900 | 1,088,131 | 0.95 | (0.17) | 3 | 9,900 | 2,723,135 | 0.82 | (0.09) | 3,000 | 68 | 0.29 | (0.05) |
RF00080 | 688 | 52% | 33 | 688 | 698,942 | 0.71 | (0.08) | 19 | 688 | 1,279,375 | 0.60 | (0.06) | 326 | 540 | 0.42 | (0.06) |
RF02003 | 176 | 52% | 21 | 176 | 1,174,167 | 0.53 | (0.03) | 6 | 176 | 1,168,093 | 0.32 | (0.00) | 28 | 814 | 0.11 | (0.01) |
RF00458 | 16 | 53% | 20 | 16 | 88 | 0.94 | (0.18) | 14 | 16 | 2,688 | 0.96 | (0.18) | 12 | 1,224 | 0.73 | (0.13) |
RF00685 | 131 | 55% | 18 | 131 | 40,952 | 0.98 | (0.19) | 7 | 131 | 103,276 | 0.97 | (0.19) | 88 | 2,945 | 0.63 | (0.10) |
RF00167 | 1,244 | 56% | 25 | 1,244 | 2,514,701 | 0.58 | (0.04) | 17 | 1,244 | 2,611,256 | 0.28 | (0.00) | 660 | 624 | 0.52 | (0.10) |
RF01705 | 598 | 56% | 26 | 598 | 2,704,796 | 0.49 | (0.02) | 17 | 598 | 2,698,712 | 0.42 | (0.00) | 57 | 60 | 0.08 | (0.01) |
RF01852 | 1,050 | 56% | 22 | 1,050 | 1,026,233 | 0.99 | (0.19) | 14 | 1,050 | 1,488,254 | 0.94 | (0.17) | 543 | 83,268 | 0.44 | (0.06) |
RF01734 | 584 | 57% | 10 | 584 | 2,614,228 | 0.69 | (0.05) | 5 | 584 | 2,668,392 | 0.46 | (0.01) | 201 | 114 | 0.30 | (0.05) |
RF00556 | 201 | 58% | 8 | 201 | 69,808 | 0.97 | (0.18) | 6 | 201 | 1,514,311 | 0.92 | (0.15) | 91 | 1,024 | 0.44 | (0.08) |
RF00713 | 14 | 58% | 27 | 14 | 10,349 | 0.99 | (0.19) | 18 | 14 | 16,477 | 0.88 | (0.16) | 13 | 552 | 0.92 | (0.18) |
RF00170 | 41 | 59% | 13 | 41 | 53 | 0.97 | (0.18) | 9 | 41 | 9,197 | 0.96 | (0.18) | 29 | 176 | 0.70 | (0.14) |
RF00706 | 69 | 59% | 13 | 69 | 1 | 1.00 | (0.20) | 9 | 69 | 12 | 0.97 | (0.19) | 66 | 194 | 0.95 | (0.18) |
RF00747 | 29 | 59% | 20 | 29 | 130 | 0.97 | (0.18) | 16 | 29 | 159,898 | 0.96 | (0.18) | 28 | 236 | 0.96 | (0.19) |
RF00778 | 20 | 59% | 33 | 20 | 394,560 | 0.93 | (0.17) | 23 | 20 | 167,029 | 0.79 | (0.13) | 17 | 390 | 0.84 | (0.16) |
RF01065 | 118 | 59% | 17 | 118 | 0 | 1.00 | (0.20) | 9 | 118 | 0 | 1.00 | (0.20) | 70 | 305 | 0.59 | (0.11) |
RF01733 | 9 | 63% | 9 | 9 | 0 | 1.00 | (0.20) | 7 | 9 | 0 | 1.00 | (0.20) | 7 | 918 | 0.77 | (0.15) |
RF00522 | 415 | 67% | 5 | 415 | 1,461 | 0.99 | (0.19) | 5 | 415 | 32,224 | 0.99 | (0.19) | 359 | 391 | 0.63 | (0.10) |
RF01862 | 15 | 67% | 7 | 15 | 0 | 1.00 | (0.20) | 5 | 15 | 0 | 1.00 | (0.20) | 10 | 82 | 0.66 | (0.13) |
RF00104 | 406 | 69% | 24 | 406 | 989,362 | 0.99 | (0.19) | 14 | 406 | 1,560,674 | 0.99 | (0.19) | 237 | 72 | 0.45 | (0.07) |
RF00165 | 431 | 69% | 9 | 431 | 0 | 1.00 | (0.20) | 8 | 431 | 1 | 0.99 | (0.19) | 318 | 192 | 0.73 | (0.14) |
RF01185 | 108 | 69% | 13 | 108 | 24,759 | 0.99 | (0.19) | 13 | 108 | 24,759 | 0.99 | (0.19) | 104 | 329 | 0.93 | (0.18) |
RF01838 | 77 | 69% | 4 | 77 | 0 | 1.00 | (0.20) | 4 | 77 | 0 | 1.00 | (0.20) | 77 | 172 | 1.00 | (0.20) |
RF02031 | 164 | 71% | 17 | 164 | 297,941 | 0.99 | (0.19) | 12 | 164 | 521,018 | 0.99 | (0.19) | 100 | 218 | 0.60 | (0.11) |
RF00052 | 210 | 72% | 16 | 210 | 0 | 1.00 | (0.20) | 12 | 210 | 0 | 1.00 | (0.20) | 207 | 12,496 | 0.98 | (0.19) |
RF00543 | 103 | 73% | 26 | 103 | 0 | 1.00 | (0.20) | 19 | 103 | 0 | 1.00 | (0.20) | 102 | 110 | 0.99 | (0.19) |
RF01744 | 14 | 73% | 7 | 14 | 0 | 1.00 | (0.20) | 5 | 14 | 0 | 1.00 | (0.20) | 11 | 5,377 | 0.74 | (0.14) |
RF01769 | 149 | 75% | 16 | 149 | 0 | 1.00 | (0.20) | 10 | 149 | 0 | 1.00 | (0.20) | 149 | 150 | 0.99 | (0.19) |
RF00110 | 161 | 81% | 19 | 161 | 0 | 1.00 | (0.20) | 17 | 161 | 0 | 1.00 | (0.20) | 160 | 791 | 0.99 | (0.19) |
RF01967 | 50 | 84% | 37 | 50 | 660,130 | 0.98 | (0.19) | 26 | 50 | 475,242 | 0.98 | (0.19) | 48 | 691 | 0.95 | (0.19) |
RF01472 | 26 | 85% | 6 | 26 | 0 | 1.00 | (0.20) | 1 | 26 | 0 | 1.00 | (0.20) | 26 | 412 | 1.00 | (0.20) |
RF01953 | 46 | 85% | 32 | 46 | 0 | 1.00 | (0.20) | 22 | 46 | 0 | 1.00 | (0.20) | 46 | 772 | 1.00 | (0.20) |
RF00372 | 45 | 86% | 28 | 45 | 0 | 1.00 | (0.20) | 24 | 45 | 0 | 1.00 | (0.20) | 45 | 197 | 0.99 | (0.19) |
RF01980 | 43 | 86% | 39 | 43 | 830,971 | 0.97 | (0.19) | 28 | 43 | 702,352 | 0.96 | (0.19) | 43 | 341 | 1.00 | (0.20) |
RF00469 | 1,366 | 89% | 12 | 1,366 | 46,351 | 0.99 | (0.19) | 7 | 1,366 | 99,045 | 0.99 | (0.19) | 1,341 | 474 | 0.97 | (0.19) |
Average | 66% | 0.93 | (0.17) | 0.89 | (0.16) | 0.72 | (0.14) |