Table 1 BPMs where 1 module includes the COG complex
From: Genecentric: a package to uncover graph-theoretic structure in high-throughput epistasis data
BPM | Selected enriched GO terms |
|---|---|
COG6 COG5 COG8 PIB2 COG7 | intra-Golgi vesicle-mediatedtransport (4/5) |
| Â | protein targeting to vacuole (4/5) |
ARL1 VPS35 GET3 ARL3 | protein transport (9/10) |
SYS1 GOT1 PEP8 SFT2 | Golgi apparatus (7/10) |
MNN1 VPS17 | endosome transport (6/10) |
| Â | vesicle-mediated transport (9/10) |
COG6 RIC1 MRP8 COG5 COG7 SNC1 COG8 GCS1 PIB2 SRO7 | intra-Golgi vesicle-mediatedtransport (4/10)Golgi vesicle transport (7/10) |
| Â | vesicle-mediated transport (9/10) |
ARL1 VPS35 GET3 ARL3 SYS1 SRO77 PEP8 SFT2 GOT1 SNC2 VPS13 VPS17 | post-Golgi vesicle-mediatedtransport (7/12)Golgi vesicle transport (8/12) |
| Â | establishment of proteinlocalization (10/12) |
| Â | retromer complex (3/12) |
COG6 YPT7 COG7 MVB12 YPT52 COG5 CCZ1 ARF3 COG8 ENT3 YPT53 | intra-Golgi vesicle-mediatedtransport (4/11)establishment of proteinlocalization to vacuole (8/11) |
| Â | vacuolar transport (10/11) |
| Â | GTP binding (4/11) |
ARL1 VPS35 GET3 ARL3 | endosome transport (7/12) |
YPT31 BOR1 SYS1 GOT1 | Golgi vesicle transport (7/12) |
PEP8 SFT2 VPS17 YOL019W | retrograde transport, endosome to Golgi (4/12) |
| Â | establishment of proteinlocalization (11/12) |
| Â | retromer complex (3/12) |
COG6 COG5 COG8 COG7 | intra-Golgi vesicle-mediatedtransport (4/4) |
| Â | protein targeting to vacuole (4/4) |
| Â | establishment of prtoeinlocalization (4/4) |
ARL1 VPS35 GSF2 GET3 ARE2 | retromer complex (3/10) |
SFT2 GOT1 SCS7 PEP8 VPS17 | |
COG6 RIC1 MRP8 EIS1 ARF1 COG5 PIB2 COG7 COG8 GCS1 | intra-Golgi vesicle mediatedtransport (5/10) |
| Â | Golgi vesicle transport (6/10) |
ARL1 VPS35 GSF2 ARL3 SYS1 APL5 GET3 PEP8 SFT2 GOT1 ARE1 SCS7 VPS13 VPS17 | protein transport (11/14)Golgi apparatus (8/14)endosome transport (7/14)Golgi vesicle transport (7/14) |
| Â | establishment of proteinlocalization (11/14) |
COG6 RIC1 MRP8 VPS41 EIS1ARF1 ARF3 COG5 YPT52 COG7 COG8 GCS1 SNC1 PIB2 ENT3 | intra-Golgi vesicle-mediatedtransport (5/15)Golgi vesicle transport (8/15)vesicle-mediated transport (13/15) |
| Â | establishment of proteinlocalization (11/15) |
ARL1 VPS35 GSF2 ARL3 | endosome transport (9/17) |
YPT31 SYS1 VPS17 GET3 | Golgi vesicle transport (8/17) |
PEP8 SFT2 GOT1 SNC2 SCS7VPS13 MNN1 VPS29 ARE2 | retrograde transport, endosome to Golgi (5/17) |
| Â | establishment of proteinlocalization (12/17) |
| Â | retromer complex (3/17) |