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Table 2 REML output for the probe position dataset

From: Empirical assessment of competitive hybridization and noise in ultra high density canine tiling arrays

Fixed term

Fstatistic

P-value

Effect

Standard error

Probe GC

17334.54

<0.001

0.069

0.0005

loge Off-targets

152.34

<0.001

0.460

0.037

Free energy

1626.64

<0.001

0.153

0.004

PolyA

33.81

<0.001

0.034

0.006

PolyC

7.30

0.008

0.081

0.030

PolyG

37.21

<0.001

0.132

0.022

PolyT

101.30

<0.001

0.050

0.005

Offset

650.03

<0.001

 

0.007a

  6 bp

  

0

 

  26 bp

  

0.190

 

loge Background

364.97

<0.001

0.142

0.007

loge Segment length

17.84

<0.001

-0.019

0.004

Probe position

4.04

0.044

0.0002

0.00009

  1. a Standard error of the difference between the effect of 6 bp or 26 bp offset.
  2. This probe set included all probes, after filtering. The predicted effects of each variable and factor level on hybridization intensity (loge scale) are shown and the associated standard error of predicted effects.