MatrixCatch - a novel tool for the recognition of composite regulatory elements in promoters

BMC Bioinformatics

Table 1 recognition of regulatory elements in tissue specific promoters

Specificity level (Min⁺/ Max^-)	0.90/0.50	0.75/0.50	0.66/0.50	0.50/0.25	0.33/0.15
MatrixCatch	1	4	7	4	5
CMA	0	1	3	0	1
ModuleSearcher	0	1	6	1	3
CisModule	0	0	1	1	2

Number of datasets of tissue specific promoters in which the programs found at least one module with the required level of specificity. The total number of datasets is 11.

ISSN: 1471-2105