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Table 2 Specificity values of regulatory modules

From: MatrixCatch - a novel tool for the recognition of composite regulatory elements in promoters

Dataset (number of seq.)

MatrixCatch

CMA

ModuleSearcher

CisModule

Breast (24)

5.29

1.65

2.90

3.66

Heart (68)

2.60

-

1.38

-

Kidney (51)

3.47

1.46

2.54

-

Muscle (86)

1.43

-

1.35

-

Pancreas (61)

2.56

-

1.43

-

Prostate (17)

9.54

6.19

2.49

6.54

Thyroid (74)

1.62

-

1.40

-

  1. Highest values of specificity (C+/C-) shown by the programs in different datasets. None of the programs found modules in the datasets: Cerebellum, Liver, Spleen and Testis.