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Table 2 Specificity values of regulatory modules

From: MatrixCatch - a novel tool for the recognition of composite regulatory elements in promoters

Dataset (number of seq.) MatrixCatch CMA ModuleSearcher CisModule
Breast (24) 5.29 1.65 2.90 3.66
Heart (68) 2.60 - 1.38 -
Kidney (51) 3.47 1.46 2.54 -
Muscle (86) 1.43 - 1.35 -
Pancreas (61) 2.56 - 1.43 -
Prostate (17) 9.54 6.19 2.49 6.54
Thyroid (74) 1.62 - 1.40 -
  1. Highest values of specificity (C+/C-) shown by the programs in different datasets. None of the programs found modules in the datasets: Cerebellum, Liver, Spleen and Testis.