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Table 1 Comparison of PKIS with kinase-specific P-site prediction tools on testing data

From: PKIS: computational identification of protein kinases for experimentally discovered protein phosphorylation sites

Kinase

PKIS

GPS2.1

Musite

KinasePhos2.0

PPSP

 

Sn

Sp

Sn

Sp

Sn

Sp

Sn

Sp

Sn

Sp

Erk2 (MAPK1)

13.9%

97.6%

5.7%

97.2%

4.4%

97.4%

3.8%

97.4%

13.9%

97.6%

p38a (MAPK14)

13.5%

97.3%

0.0%

96.3%

8.1%

96.6%

0.0%

97.3%

5.4%

97.3%

CK2alpha

60.7%

99.1%

58.3%

99.0%

49.1%

99.1%

35.6%

99.1%

53.4%

99.0%

CDC2

37.5%

93.3%

12.5%

92.0%

0.0%

90.3%

0.0%

93.2%

12.5%

93.2%

PKCa

37.3%

99.8%

0.0%

99.4%

0.0%

99.6%

1.7%

99.4%

10.2%

99.7%

SYK

45.0%

93.0%

25.0%

93.0%

NA

NA

35.0%

94.4%

45.0%

93.0%

LCK

40.0%

97.4%

26.7%

92.1%

6.7%

93.4%

20.0%

96.1%

40.0%

97.4%

FYN

23.5%

94.6%

11.8%

94.6%

5.9%

90.5%

23.5%

94.6%

23.5%

94.6%

  1. NA: This tool could not predict whether a residue had been phosphorylated by the corresponding kinase or not.