Method | #DE = 100 | #DE = 1000 | #DE = 2000 | ||||||
---|---|---|---|---|---|---|---|---|---|
 | 1.5 FC | 2 FC | 4 FC | 1.5 FC | 2 FC | 4 FC | 1.5 FC | 2 FC | 4 FC |
tweeDEseq | 2 | 2 | 1 | 1 | 1 | 1 | 2 | 2 | 2 |
DESeq - PgOn | 4 | 4 | 4 | 3 | 2 | 2 | 1 | 1 | 1 |
DESeq - Pmax | 1 | 1 | 3 | 6 | 4 | 4 | 6 | 4 | 4 |
DESeq - CgOn | 9 | 9 | 9 | 9 | 7 | 5 | 9 | 5 | 5 |
DESeq - Cmax | 3 | 3 | 2 | 2 | 3 | 3 | 3 | 3 | 3 |
edgeR - (def) | 7 | 7 | 7 | 7 | 8 | 7 | 7 | 8 | 7 |
edgeR - QLF (def) | 6 | 6 | 6 | 5 | 5 | 6 | 4 | 6 | 6 |
edgeR - Df1 | 8 | 8 | 8 | 8 | 9 | 9 | 8 | 9 | 9 |
edgeR - QLF Df1 | 5 | 5 | 5 | 4 | 6 | 8 | 5 | 7 | 8 |