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Table 1 Number of significant transcripts in standard LIMMA and OSRR models at different p-value cutoffs

From: Differential expression analysis with global network adjustment

Up/Down

P-Value

LIMMA

OSRR

Both

Down

0.0500

94

209

92

 

0.0100

25

79

25

 

0.0010

9

19

9

 

0.0001

5

8

5

Up

0.0500

241

642

227

 

0.0100

46

251

42

 

0.0010

6

52

5

 

0.0001

2

15

2

  1. Up/Down corresponds to higher/lower expression in the cases relative to controls.