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Table 3 Example of bisulfite-rate summary at the chromosome level

From: MethyQA: a pipeline for bisulfite-treated methylation sequencing quality assessment

chr

TNCGC

TNCGCwC

Percent

Min

25thpecentile

Median

Mean

75thperecentile

Max

Chr1

44683043

622926

1.394%

0

1

1

0.9961

1

1

  1. TNCGC means the “total number of nonCGc sites”. TNCGCwc means the “total number of nonCGc sites with coverage”. “Percent” means the percent of nonCGc sites with coverage. The last 6 columns are a 6-number-summary (minimum, 25th percentile, median, mean, 75th percentile, and maximum) for the bisulfite rates of nonCGc sites on chr1.
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BMC Bioinformatics

ISSN: 1471-2105

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