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Table 4 Prediction of regulations on the updated network

From: Learning a Markov Logic network for supervised gene regulatory network inference

Bagged MLNs
λ   TPR
50   64.7
100   72.6
500   80.4
750   84.3
1000   9 0 . 2
2000   88.2
5000   84.3
Bagged pairwise SVMs
C Pairwise sum Sum
  TPR TPR
0.001 9 0 . 2 58.8
0.01 88.3 58.8
0.1 88.3 58.8
1 74.5 52.9
10 64.7 43.1
100 64.7 43.1
1000 64.7 43.1
  1. This table lists the true positive rates (TPR) obtained for the prediction of regulations in R 2 + R 1 + from R1 using asymmetric bagging with 30 samples for bagged MLNs and bagged pairwise SVMs. The TPR values were obtained using a threshold maximizing the averaged F1-measure on a validation set. Notations are given in Tables 2 and 3.