Table 10 Number of SNVs called by SAMtools with different cutoffs of genotype quality
From: Comparing a few SNP calling algorithms using low-coverage sequencing data
Cutoffs | SNVs | dbSNPs | Non-dbSNPs |
|---|---|---|---|
≥ 4 (all) | 570 | 398 | 172 |
≥ 5 | 567 | 397 | 170 |
≥ 6 | 565 | 396 | 169 |
≥ 7 | 564 | 395 | 169 |
≥ 8 | 563 | 395 | 168 |
≥ 9 | 559 | 393 | 166 |
≥ 10 | 558 | 393 | 165 |