Table 4 Key metrics in each of the four algorithms
From: Comparing a few SNP calling algorithms using low-coverage sequencing data
| Â | Metrics |
|---|---|
SOAPsnp | Consensus score [0, 99] |
Atlas-SNP2 | Posterior Probability |
SAMtools | Genotype quality [0,99], QUAL |
GATK-UGT | Genotype quality [0,99], QUAL, FisherStrand, HaplotypeScore, MappingQualityRankSumTest, ReadPosRankSumTest |