Table 8 Number of SNVs called by GATK-UGT with different cutoffs of genotype quality
From: Comparing a few SNP calling algorithms using low-coverage sequencing data
Cutoffs | SNVs | dbSNPs | Non-dbSNPs |
|---|---|---|---|
≥ 0 | 729 | 478 | 251 |
≥ 5 | 724 | 476 | 248 |
≥ 6 | 723 | 476 | 247 |
≥ 7 | 681 | 450 | 231 |
≥ 8 | 681 | 450 | 231 |
≥ 9 | 676 | 446 | 230 |
≥ 10 | 476 | 217 | 259 |